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About
Germplasm List allows you to browse or search germplasm lists. You can edit the list metadata, lock/unlock the germplasm list. The Germplasm List re-engineering permits you now to customize the list view, import list updates, reorder entries, remove entries, add entries from a specific list to a different list, delete and clone lists, and export list data and labels.
Browse Germplasm Lists
Click on the Browse link. You will see the list tree browser
Select one or more germplasm lists
Click on OK
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The lists selected are opened in different tabs
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Search Germplasm Lists
You will see a paginated table of all of the available lists in the system with the corresponding information (List Name, Parent folder, Description, List Owner, List type, #of Entries, Status -locked/unlocked-, Notes, List Date)
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Search by: List type> Harvest
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Apply the filter
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Actions
Import List
Actions > Import List
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Download the template. This template has the Observation and Entry Details sheets
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Note: Users with the corresponding permissions can define “Entry detail” variables type via Ontology Manager (see https://ibplatform.atlassian.net/wiki/spaces/BMS/pages/2516714974/v20+Manage+Ontologies#Add-%26-Edit-Variable ). Once the user creates a new entry detail variable, it will be available in the template for the list importation and can be added to an existing list (https://ibplatform.atlassian.net/wiki/spaces/BMS/pages/2527035410/v20+Germplasm+Lists+CB#Add-and-Remove-Entry-Details )
Browse for the file to be imported and click on Next.
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Select one germplasm and click on Select. The system marks the record as matched (✓)
And the system retrieves shows the GID and DESIGNATION of the matched germplasm in the table
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The system will auto-enumerate ENTRY_NO using the order of the excel file, and the list will become available for management
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Customize the list view
You will be able to customize your lists by enabling them to add and remove any germplasm information.
List Selection
Click on a list.
The system opens a new tab in the germplasm list section with the corresponding list entries with the following default columns (ENTRY_NO, GID, DESIGNATION, LOTS, AVAILABLE, UNIT).
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In the example displayed, GID, DESIGNATION, and LOTS are hyperlinks to the corresponding germplasm details
Add and Remove Entry Details
Select an Entry detail variable and click on the remove link.
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Click on a cell and add values, it could be typing a text, adding a number, selecting a categorical value, adding a date, it depends on the variable data type.
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Add and Remove Columns
Using the Columns button you will be able to search, add and remove columns in the germplasm list table. NAMES, PASSPORT, and ATTRIBUTES are also included.
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The columns selected are not displayed anymore
Define the level of the pedigree to consider for CROSS string
You can define the generation to be considered for the CROSS string (up to 10 levels).
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Click on the Cross expansion icon, and specify the level desired
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Apply
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Edit List Metadata
Click on the Edit List Metadata icon
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Save. A success message is displayed and the changes are applied.
Lock / Unlock a Germplasm List
You can unlock and lock the germplasm lists for restricting actions over the list. It can be done by clicking on the icon.
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Note: When a list is locked the Edit List Metadata icon is not available. The Columns button is not displayed, and the options available under the Actions button are: i) Add entries to another list, ii) Clone list, and iii) Export list data and labels (See next section).
Germplasm List Actions
Import list update
Using this action you will be able to update a germplasm list, update the ENTRY_CODE and ENTRY_DETAILS variables adding them, or edit the existing values. The action can be done for all entries or some of the germplasm list.
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Note: For ENTRY_CODE you need to add the column using the Columns button and apply the change.
Reorder entries
Triggering this action, you will be able to manipulate the entry number order of the list entries under the condition that the sequential nature of the list (1 to N) is always preserved.
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A success message is displayed and the entries selected are reordered starting at position 10 in the example shown.
Remove entries
With this action, you are able to remove the selected entries (and corresponding entry detail values) from the list and re-enumerate ENTRY_NO.
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A success message is displayed, the entries are removed from the list, and the ENTRY_NO is re-enumerated.
Add entries
The user can add additional entries to the list.
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The system adds the selected germplasm as new entry/es at the bottom of the list, populating the corresponding configured columns and letting the user define the values for the corresponding entry details
Add entries to another list
This action enables you to add entries from one list to another list.
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The system adds the selected germplasm as new entry/es at the bottom of the destination list, populating the corresponding configured columns and letting the user define the values for the corresponding entry details.
Delete list
Open the list you want to delete
Actions> Delete list
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A success message is shown, “Successfully deleted list.” And the list is not displayed anymore.
Clone list
When you trigger this action, the system permits you to clone a list. The BMS creates a new list with the specified name conserving the elements, enumeration (ENTRY_NO), germplasm columns, and entry details (variables and values) of the original list.
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The cloned list is opened in a new list tab
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Export list and labels
This component from the Germplasm List module has the same features that the others printing labels implemented into the BMS, the presets options, output formats, the “specify labels stock” options for PDF format.
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