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browse for germplasm lists
import a list of existing germplasm
edit list metadata, lock/unlock the germplasm list
customize the list view
import list updates in batch
reorder entries
remove entries
add entries from a specific list to a different list
delete and clone lists
export list data and labels
move a list to a different folder
export list data and labels
calculate Coefficient of Parentage
Browse Germplasm Lists
Click on the Browse link. You will see the list tree browser
Select one or more germplasm lists
Click on OK
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Note: Users with the corresponding permissions can define “Entry detail” variables type via Ontology Manager (see https://ibplatform.atlassian.net/wiki/spaces/BMS/pages/25167149742572421921/v20v21+Manage+Ontologies#Add-%26-Edit-Variable ). Once the user creates a new entry detail variable, it will be available in the template for the list importation and can be added to an existing list (https://ibplatform.atlassian.net/wiki/spaces/BMS/pages/25270354102572420170/v20v21+Germplasm+Lists#Add-and-Remove-Entry-Details )
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Select one germplasm and click on Select. The system marks the record as matched (✓)
And the system retrieves shows the GID and DESIGNATION of the matched germplasm in the table
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The import list process is able to read in the variables assigned to the different entries by variable name or alias. In addition, the import validates that the values defined for different does do not conflict with the defined scale and prevents prevent the import otherwise.
Example:
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This component from the Germplasm List module has the same features that the others other printing labels implemented into the BMS, the presets options, output formats, and the “specify labels stock” options for PDF format.
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The excel file is exported and populated properly with all fields included.
Coefficient of Parentage
You will be able to calculate the coefficient of parentage for a given set of germplasm. This coefficient in turn determines a measure of relatedness between germplasm by traversing their corresponding pedigree trees and recursively identifying the common ancestors.
btype parameter configuration
Go to Manage Crop Settings > Parameters tab
Notice btype field is editable. You can configure btype parameter following: 0=cross fertilizing, 1=self fertilizing, 2=self Fertilizing with unknown source but known parents.
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Coefficient of parentage calculation
Go to Manage lists
Open the list you are interested in
Select entries
Actions > Coefficient of parentage (Beta)
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You will see a confirmation message about the calculation progress
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When the Coefficient of parentage calculation finishes the results are displayed in a matrix.
In the Name Selector, GID and PREFERRED NAME options are always available, plus other common name types if available for all the gids selected.
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Download the results in CSV format by clicking in the Download button